Galaxy Australia Media

Galaxy Australia FGENESH++ Access Request

FGENESH++ is a bioinformatics pipeline for automatic prediction of genes in eukaryotic genomes. It can produce fully automated genome annotations of a quality similar to manual annotation, and is extremely fast compared to some other automated genome annotation pipelines.

FGENESH++ is available on Galaxy Australia for Australian researchers. Please apply for access, using your institutional email. The following sign up form is to confirm eligibility for access to the Australian FGENESH++ Service on Galaxy Australia.

Name

Galaxy Australia account email

Your research (optional)

Please provide a brief description of your research

Which broad topics best describe your research?

Select matrices

An annotation matrix for your species (or a related species) may need to be installed prior to use. This will be used as a reference to annotate your genome, so you should nominate a matrix with the closest taxonomic proximity to your subject species. If you have more than one species of interest, you can select multiple matrices.

0 matrices selected

Fungi
- Ascomycota
  - Eurotiomycetes
    - Chaetothyriales
      - Cyphellophoraceae
        
        Cyphellophora
        
        Cyphellophora europaea - Cyphellophora europaea
      - Herpotrichiellaceae
        
        Coniosporium
        
        Coniosporium apollinis - rock-inhabiting microcolonial fungi
        
        Fonsecaea
        
        Fonsecaea pedrosoi - major causative agent of chromoblastomycosis
        
        Rhinocladiella
        
        Rhinocladiella mackenziei - Ramichloridium mackenziei, cause of cerebral phaeohyphomycosis
        
        Capronia - Capronia coronata+epimyces+semiimmersa
        Cladophialophora - Cladophialophora bantiana+carrionii+immunda+psammophila+yegresii
        Exophiala - Exophiala_aquamarina+dermatitidis+mesophila+oligosperma+sideris+spinifera+xenobiotica
    - Eurotiales
      - Aspergillaceae
        
        Aspergillus
        
        Aspergillus fischeri - Aspergillus fischeri
        
        Byssochlamys
        
        Byssochlamys spectabilis - anamorph Paecilomyces variotii
        
        Penicillium
        
        Penicillium chrysogenum - fungus, Penicillium notatum
        
        Rasamsonia
        
        Rasamsonia emersonii - Talaromyces emersonii, Penicillium emersonii
        
        Emericella - Aspergillus; filamentous fungi
        Talaromyces - generic, Talaromyces marneffei+stipitatus
    - Onygenales
      - Ajellomycetaceae
        
        Histoplasma
        
        Histoplasma capsulatum - cause the histoplasmosis
        Histoplasma - generic, dimorphic fungi
        
        Ajellomyces - generic, Ajellomyces capsulatus+dermatitidis
        Paracoccidioides - generic, Paracoccidioides_brasiliensis+lutzii
      - Arthrodermataceae
        
        Microsporum
        
        Microsporum gypseum - soil-associated dermatophyte, Arthroderma gypseum
        
        Arthroderma - generic, causal agent of dermatophytosis
      - Onygenaceae
        
        Coccidioides
        
        Coccidioides immitis - pathogenic fungus
        
        Uncinocarpus
        
        Uncinocarpus reesii - non-pathogenic fungus
        
        Blastomyces - generic, causal agent of blastomycosis
        Emmonsia - generic, Emmonsia crescens+parva
    - Phaeomoniellales
      - Phaeomoniellaceae
        
        Phaeomoniella
        
        Phaeomoniella chlamydospora - Phaeoacremonium chlamydosporum
  - Leotiomycetes
    - Erysiphales
      - Amorphothecaceae
        
        Amorphotheca
        
        Amorphotheca resinae - creosote fungus
        
        Oidiodendron
        
        Oidiodendron majus - ascomycetes
      - Erysiphaceae
        
        Blumeria
        
        Blumeria graminis - grass mildew
        
        Erysiphe
        
        Erysiphe necator - grape powdery mildew
    - Helotiales
      - Drepanopezizaceae
        
        Drepanopeziza
        
        Drepanopeziza brunnea - plant pathogen
      - Gelatinodiscaceae
        
        Ascocoryne
        
        Ascocoryne sarcoides - jelly drops, purple jellydisc
      - Helotiaceae
        
        Glarea
        
        Glarea lozoyensis - ascomycetes
        
        Lanzia
        
        Lanzia echinophila - Sclerotinia echinophila
        
        Hymenoscyphus
        
        Hymenoscyphus herbarum - Hymenoscyphus herbarum
        Hymenoscyphus - generic, Hymenoscyphus fraxineus+ fructigenus+ infarciens+ laetus+ repandus+ salicellus+ scutula+ varicosporoides
      - Rutstroemiaceae
        
        Rutstroemia
        
        Rutstroemia sydowiana - Rutstroemia sydowiana
      - Sclerotiniaceae
        
        Botryotinia
        
        Botryotinia fuckeliana - plant pathogen, Botrytis cinerea
        
        Ciborinia
        
        Ciborinia camelliae - causal agent of Camellia flower blight
        
        Sclerotinia
        
        Sclerotinia sclerotiorum - plant pathogen
        Sclerotinia - generic, Sclerotinia borealis+sclerotiorum
        
        Botrytis - generic, plant pathogen
    - Thelebolales
      - Thelebolaceae
        
        Pseudogymnoascus
        
        Pseudogymnoascus destructans - Pseudogymnoascus destructans, a psychrophilic fungus that causes white-nose syndrome (WNS
        Pseudogymnoascus - generic, Pseudogymnoascus destructans+pannorum
  - Orbiliomycetes
    - Orbiliales
      - Orbiliaceae
        
        Arthrobotrys
        
        Arthrobotrys oligosporus - mitosporic predatory fungi
  - Pezizomycetes
    - Pezizales
      - Pyronemataceae
        
        Pyronema
        
        Pyronema omphalodes - Pyronema confluens
  - Pneumocystomycetes
    - Pneumocystales
      - Pneumocystaceae
        
        Pneumocystis - generic, Pneumocystis carinii+ jirovecii+ murina
  - Saccharomycetes
    - Saccharomycetales
      - Debaryomycetaceae
        
        Candida
        
        Candida albicans - diploid yeast, human pathogen
        Candida glabrata - haploid yeast, human pathogen
        
        Millerozyma
        
        Millerozyma farinosa - yeast
        
        Scheffersomyces
        
        Scheffersomyces stipitis - yeast, Pichia stipitis
      - Dipodascaceae
        
        Dipodascus
        
        Dipodascus geotrichum - Oospora lactis, teleomorph: Geotrichum candidum
        
        Yarrowia
        
        Yarrowia lipolytica - yeast
      - Eremotheciaceae
        
        Eremothecium - generic, Eremothecium coryli+ cymbalariae+ gossypii
      - Metschnikowiaceae
        
        Clavispora
        
        Clavispora lusitaniae - yeast
        
        Metschnikowia
        
        Metschnikowia fructicola - ascosporic yeast, 137 sequences
      - Phaffomycetaceae
        
        Cyberlindnera - generic, Cyberlindnera fabianii+ jadinii
      - Pichiaceae
        
        Dekkera
        
        Dekkera bruxellensis - yeast
        Dekkera bruxellensis - Brettanomyces bruxellensis
        
        Issatchenkia
        
        Issatchenkia orientalis - Candida krusei, Issatchenkia orientalis, Candida acidothermophilum
        
        Komagataella
        
        Komagataella pastoris - methylotrophic yeast, Pichia pastoris
      - Saccharomycetaceae
        
        Kluyveromyces
        
        Kluyveromyces lactis - yeast
        
        Saccharomyces
        
        Saccharomyces cerevisiae - baker's yeast
        
        Zygosaccharomyces
        
        Zygosaccharomyces rouxii - osmoresistant yeast
        
        Kazachstania - yeast, generic
        Lachancea - generic
        Nakaseomyces - generic, Nakaseomyces bacillisporus+ delphensis
        Naumovozyma - generic, Naumovozyma_castellii+dairenensis
        Ogataea - generic, Ogataea parapolymorpha+ polymorpha
        Spathaspora - generic, Spathaspora arborariae+ passalidarum
  - Schizosaccharomycetes
    - Schizosaccharomycetales
      - Schizosaccharomycetaceae
        
        Schizosaccharomyces
        
        Schizosaccharomyces pombe - fission yeast
  - Sordariomycetes
    - Amphisphaeriales
      - Pestalotiopsidaceae
        
        Pestalotiopsis
        
        Pestalotiopsis fici - plant pathogen
    - Diaporthales
      - Cryphonectriaceae
        
        Chrysoporthe - generic, Chrysoporthe austroafricana+cubensis+deuterocubensis
      - Diaporthaceae
        
        Diaporthe
        
        Diaporthe ampelina - Phomopsis viticola, Phomopsis ampelina, Fusicoccum viticolum
    - Glomerellales
      - Glomerellaceae
        
        Colletotrichum - Colletotrichum fioriniae+gloeosporioides+graminicola+higginsianum+orbiculare+sublineola
    - Hypocreales
      - Bionectriaceae
        
        Acremonium
        
        Acremonium chrysogenum - Cephalosporium acremonium
      - Clavicipitaceae
        
        Claviceps
        
        Claviceps purpurea - ergot fungus
        
        Epichloe
        
        Epichloe typhina - plant pathogen
        
        Hypocrella
        
        Hypocrella siamensis - anamorph: Aschersonia badia
        
        Periglandula
        
        Periglandula ipomoeae
        
        Metacordyceps - generic, Metacordyceps brittlebankisoides+ chlamydosporia+ taii
        Metarhizium - generic
      - Cordycipitaceae
        
        Cordyceps
        
        Cordyceps farinosa - Paecilomyces farinosus
        Cordyceps militaris - entomopathogenic fungi
        
        Beauveria - generic, asexually-reproducing fungi
      - Hypocreaceae
        
        Escovopsis
        
        Escovopsis weberi - parasitic microfungus
        
        Hypocrea - generic, Hypocrea jecorina+ lixii+ pseudokoningii+ virens
      - Nectriaceae
        
        Dactylonectria
        
        Dactylonectria macrodidyma - plant pathogen
        
        Fusarium
        
        Fusarium graminearum - generic, haploid homothallic ascomycete
        Fusarium - generic, Fusarium graminearum+ fujikuroi+ oxysporum+ solani+ verticillioides
        
        Gibberella - generic, Gibberella circinata+fujikuroi
      - Ophiocordycipitaceae
        
        Hirsutella
        
        Hirsutella minnesotensis - pathogen of the soybean cyst nematode
        
        Ophiocordyceps
        
        Ophiocordyceps sinensis - Cordyceps sinensis
      - Stachybotryaceae
        
        Stachybotrys - generic, Stachybotrys chartarum+chlorohalonata
    - Magnaporthales
      - Magnaporthaceae
        
        Gaeumannomyces
        
        Gaeumannomyces graminis - plant pathogen
        
        Harpophora - Falciphora oryzae
        Magnaporthe - generic, fungi
    - Microascales
      - Ceratocystidaceae
        
        Ceratocystis
        
        Ceratocystis platani - plant pathogen
        
        Huntiella - generic, Huntiella omanensis+ savannae
      - Microascaceae
        
        Pseudallescheria
        
        Pseudallescheria apiosperma - Scedosporium apiospermum
        Pseudallescheria boydii - Pseudallescheria apiosperma, causes of resistant life-threatening infections in immunocompromised patients
    - Ophiostomatales
      - Ophiostomataceae
        
        Graphilbum
        
        Graphilbum fragrans - Pesotum fragrans
        
        Grosmannia
        
        Grosmannia clavigera - blue stain fungus
        
        Pesotum
        
        Pesotum piceae - pine saprophyte
        
        Knoxdaviesia - generic, Knoxdaviesia capensis+proteae
        Leptographium - generic, Leptographium lundbergii+ procerum
        Sporothrix - generic, Sporothrix brasiliensis+schenckii
    - Xylariales
      - Diatrypaceae
        
        Eutypa
        
        Eutypa lata - causal agent of Eutypa dieback
    - Sordariales
      - Chaetomiaceae
        
        Thermothelomyces
        
        Thermothelomyces thermophilus - Sporotrichum thermophilum, Chrysosporium thermophilum
        
        Chaetomium - Chaetomium_globosum+thermophilum
      - Lasiosphaeriaceae
        
        Triangularia
        
        Triangularia anserina
      - Sordariaceae
        
        Neurospora
        
        Neurospora crassa - red bread mold
        
        Sordaria
        
        Sordaria macrospora - microscopic fungus
      - Sordariales - Streptotrix mycetomatis
  - Taphrinomycetes
    - Taphrinales
      - Taphrinaceae
        
        Taphrina - generic, Taphrina deformans+ flavorubra+ populina+ wiesneri
  - Dothideomycetes
    - Botryosphaeriales
      - Botryosphaeriaceae
        
        Diplodia
        
        Diplodia seriata - cause of bot canker of grapevine
        
        Macrophomina
        
        Macrophomina phaseolina - plant pathogen
        
        Neofusicoccum
        
        Neofusicoccum parvum - Fusicoccum parvum
      - Phyllostictaceae
        
        Phyllosticta
        
        Phyllosticta citricarpa - Phyllosticta citricarpa, causes Citrus Black Spot
    - Capnodiales
      - Cladosporiaceae
        
        Cladosporium
        
        Cladosporium sphaerospermum - mold
      - Mycosphaerellaceae
        
        Cercospora
        
        Cercospora canescens - causes olive leaf spot
        
        Fulvia
        
        Fulvia fulva - Cladosporium fulvum, Fulvia fulva
        
        Pseudocercospora
        
        Pseudocercospora fijiensis - black leaf streak, Mycosphaerella fijiensis , Cercospora fijiensis, Paracercospora fijiensis
        
        Ramularia
        
        Ramularia collo-cygni - pathogen of barley
        
        Sphaerulina
        
        Sphaerulina musiva - pathogen of poplar trees
        
        Zymoseptoria
        
        Zymoseptoria passerinii - Zymoseptoria passerinii, plant pathogen infecting barley
        
        Mycosphaerella - generic, Mycosphaerella arachidis+ dearnessii+ fijiensis+ graminicola+ laricina+ pini+ populicola+populorum
      - Teratosphaeriaceae
        
        Baudoinia
        
        Baudoinia compniacensis - Angels' Share fungus
        
        Hortaea
        
        Hortaea werneckii - 268 genes, halotolerant black yeast
    - Dothideales
      - Saccotheciaceae
        
        Aureobasidium - generic, black, yeast-like fungus
    - Hysteriales
      - Hysteriaceae
        
        Hysterium
        
        Hysterium pulicare - occurs on living tree bark or dead wood
    - Patellariales
      - Patellariaceae
        
        Rhytidhysteron
        
        Rhytidhysteron rufulum - Rhytidhysterium rufulum, fungal plant pathogen infecting citruses
    - Venturiales
      - Sympoventuriaceae
        
        Scolecobasidium
        
        Scolecobasidium constrictum - Dactylaria gallopava
    - Pleosporales
      - Biatriosporaceae
        
        Nigrograna
        
        Nigrograna mackinnonii - ascomycetes
      - Corynesporascaceae
        
        Corynespora
        
        Corynespora cassiicola - plant pathogen
      - Cucurbitariaceae
        
        Pyrenochaeta - cause a eumycetoma
      - Didymellaceae
        
        Peyronellaea
        
        Peyronellaea obtusa - plant pathogen that causes Frogeye leaf spot, Black rot and cankers
        
        Stagonosporopsis
        
        Stagonosporopsis tanaceti - cause of ray blight of pyrethrum
      - Leptosphaeriaceae
        
        Leptosphaeria
        
        Leptosphaeria maculans - blackleg of rapeseed fungus
        Leptosphaeria - generic, fungi
      - Massarinaceae
        
        Helminthosporium
        
        Helminthosporium solani - infecting potato tubers
      - Phaeosphaeriaceae
        
        Parastagonospora
        
        Parastagonospora nodorum - pathogen of wheat
        
        Phaeosphaeria
        
        Phaeosphaeria nodorum - Leptosphaeria nodorum
      - Pleosporaceae
        
        Alternaria
        
        Alternaria brassicicola - plant pathogen
        
        Exserohilum
        
        Exserohilum turcicum - northern corn leaf blight
        
        Stemphylium
        
        Stemphylium lycopersici - pathogen of tomatoes, Capsicum and papayas
        
        Bipolaris - generic
        Cochliobolus - generic, Cochliobolus carbonum+heterostrophus+ miyabeanus+ sativus+ victoriae
        Curvularia - generic, Curvularia lunata+ papendorfii
        Pyrenophora - generic, plant pathogen
      - Shiraiaceae
        
        Shiraia - a parasitic fungus on twigs of several genera of bamboos
      - Sporormiaceae
        
        Preussia - generic
      - Pleosporales - generic
    - Dothideomycetes - ascomycetes
- Basidiomycota
  - Agaricomycetes
    - Agaricales
      - Agaricaceae
        
        Agaricus - generic, champignons
        Coprinus - generic
      - Amanitaceae
        
        Amanita
        
        Amanita muscaria - fly agaric, fly amanita
      - Fistulinaceae
        
        Fistulina
        
        Fistulina hepatica - beefsteak polypore or ox tongue
      - Hydnangiaceae
        
        Laccaria - generic
      - Hymenogastraceae
        
        Galerina
        
        Galerina marginata - poisonous fungus
        
        Hebeloma
        
        Hebeloma cylindrosporum - mushroom-forming fungus
      - Marasmiaceae
        
        Moniliophthora - generic, Moniliophthora perniciosa+roreri
      - Omphalotaceae
        
        Gymnopus
        
        Gymnopus luxurians - fungus
      - Physalacriaceae
        
        Cylindrobasidium
        
        Cylindrobasidium torrendii - corticioid fungi
      - Pleurotaceae
        
        Pleurotus
        
        Pleurotus ostreatus - oyster mushroom
      - Psathyrellaceae
        
        Coprinopsis
        
        Coprinopsis cinerea - Coprinus macrorhizus
      - Schizophyllaceae
        
        Schizophyllum
        
        Schizophyllum commune - common in rotting wood, but can also cause disease in humans
      - Strophariaceae
        
        Hypholoma
        
        Hypholoma lateritium - brick cap
    - Amylocorticiales
      - Amylocorticiaceae
        
        Plicaturopsis
        
        Plicaturopsis crispa
    - Atheliales
      - Atheliaceae
        
        Piloderma
        
        Piloderma bicolor - Piloderma fallax
    - Boletales
      - Coniophoraceae
        
        Coniophora
        
        Coniophora puteana - cellar fungus, which causes a rot in wood
      - Hygrophoropsidaceae
        
        Leucogyrophana
        
        Leucogyrophana pinastri - spiny dry rot fungus
      - Sclerodermataceae
        
        Scleroderma
        
        Scleroderma citrinum - common earthball, pigskin poison puffball
        
        Pisolithus - generic, Pisolithus_microcarpus+tinctorius
      - Serpulaceae
        
        Serpula
        
        Serpula lacrymans - dry rot fungus
      - Suillaceae
        
        Suillus
        
        Suillus luteus - slippery jack, sticky bun
    - Cantharellales
      - Botryobasidiaceae
        
        Botryobasidium
        
        Botryobasidium vagum - botryosum
      - Ceratobasidiaceae
        
        Rhizoctonia
        
        Rhizoctonia solani - Rhizoctonia praticola, plant pathogen
    - Corticiales
      - Corticiaceae
        
        Punctularia
        
        Punctularia strigosozonata
    - Geastrales
      - Geastraceae
        
        Sphaerobolus
        
        Sphaerobolus stellatus - cannonball fungi
    - Gloeophyllales
      - Gloeophyllaceae
        
        Gloeophyllum
        
        Gloeophyllum trabeum - plant fungal pathogen
    - Hymenochaetales
      - Hymenochaetaceae
        
        Fomitiporia
        
        Fomitiporia mediterranea - plant pathogen
        
        Pyrrhoderma
        
        Pyrrhoderma noxium - plant pathogen, Phellinidium noxium
        
        Sanghuangporus
        
        Sanghuangporus baumii - Phellinus baumii, Inonotus baumii
      - Schizoporaceae
        
        Schizopora
        
        Schizopora paradoxa - Hyphodontia paradoxa
    - Jaapiales
      - Jaapiaceae
        
        Jaapia
        
        Jaapia argillacea - fungus
    - Polyporales
      - Fomitopsidaceae
        
        Fomitopsis
        
        Fomitopsis pinicola - pine bolete, pinewood king bolete
        
        Taiwanofungus
        
        Taiwanofungus camphoratus - stout camphor fungus
      - Phanerochaetaceae
        
        Phanerochaete
        
        Phanerochaete carnosa - plant pathogen infecting plane trees
        
        Phanerodontia
        
        Phanerodontia chrysosporium - New version USTILAGO+WREST
        
        Phlebiopsis
        
        Phlebiopsis gigantea - Thelephora gigantea, Peniophora gigantea
        
        Ceriporiopsis
        
        Ceriporiopsis subvermispora - Poria subvermispora
        Ceriporiopsis - basidiomycetes
      - Polyporaceae
        
        Fibroporia
        
        Fibroporia radiculosa - Antrodia radiculosa
        
        Rhodonia
        
        Rhodonia placenta - Rhodonia placenta, brown rot fungus
    - Russulales
      - Bondarzewiaceae
        
        Heterobasidion
        
        Heterobasidion irregulare - tree root rotting pathogenic fungus
      - Stereaceae
        
        Stereum
        
        Stereum hirsutum - False Turkey Tail
    - Auriculariales
      - Auriculariaceae
        
        Auricularia
        
        Auricularia subglabra - basidiomycetes
      - Auriculariales - Serendipita indica, Achlamydospora indica
      - Auriculariales - Sebacina vermifera
  - Microbotryomycetes
    - Microbotryales
      - Microbotryaceae
        
        Microbotryum
        
        Microbotryum violaceum - anther smut fungus, Ustilago violacea
    - Sporidiobolales
      - Sporidiobolaceae
        
        Rhodotorula
        
        Rhodotorula glutinis - pink yeast
        Rhodotorula toruloides - oleaginous yeast
      - Sporobolomycetaceae
        
        Sporidiobolus
        
        Sporidiobolus salmonicolor - yeast-like fungus
  - Mixiomycetes
    - Mixiales
      - Mixiaceae
        
        Mixia
        
        Mixia osmundae - Taphrina osmundae
  - Pucciniomycetes
    - Pucciniales
      - Cronartiaceae
        
        Cronartium - generic, Cronartium comandrae+ quercuum+ ribicola 206 genes only
      - Melampsoraceae
        
        Melampsora
        
        Melampsora larici-populina - poplar leaf rust fungus
      - Pucciniaceae
        
        Puccinia - rusts
  - Tremellomycetes
    - Tremellales
      - Cryptococcaceae
        
        Kwoniella - generic, Kwoniella heveanensis+ mangroviensis
      - Tremellaceae
        
        Cryptococcus
        
        Cryptococcus gattii - encapsulated yeast
        Cryptococcus neoformans - encapsulated yeast
        Cryptococcus - generic, encapsulated yeast
  - Ustilaginomycetes
    - Ustilaginales
      - Ustilaginaceae
        
        Pseudozyma - generic, Pseudozyma antarctica+aphidis+brasiliensis+flocculosa+hubeiensis
        Ustilago - smuts
- Blastocladiomycota
  - Blastocladiomycetes
    - Blastocladiales
      - Blastocladiaceae
        
        Allomyces
        
        Allomyces macrogynus - blastocladiomycetes
- Chytridiomycota
  - Chytridiomycetes
    - Spizellomycetales
      - Spizellomycetaceae
        
        Spizellomyces
        
        Spizellomyces punctatus - chytrids
  - Rhizophydiomycetes
    - Rhizophydiales - amphibian chytrid fungus
    - Rhizophydiales - 103 sequences, chytrids
- Glomeromycota
  - Glomeromycetes
    - Glomerales
      - Glomeraceae
        
        Rhizophagus
        
        Rhizophagus irregularis - glomeromycetes, Glomus irregulare
- Zygomycota
  - Mortierellomycetes
    - Mortierellales
      - Mortierellaceae
        
        Mortierella
        
        Mortierella verticillata - soil fungi
  - Mucoromycetes
    - Mucorales
      - Cunninghamellaceae
        
        Absidia
        
        Absidia idahoensis - pathogenic fungus
      - Lichtheimiaceae
        
        Lichtheimia
        
        Lichtheimia corymbifera - Absidia corymbifera, pathogenic fungus
        
        Rhizomucor - generic, Rhizomucor miehei+ variabilis
      - Mucoraceae
        
        Parasitella
        
        Parasitella parasitica - Parasitella simplex
        
        Mucor - generic, Mucor ambiguus+circinelloides
      - Mycotyphaceae
        
        Cokeromyces
        
        Cokeromyces recurvatus - pathogenic fungus
      - Rhizopodaceae
        
        Rhizopus
        
        Rhizopus arrhizus - opportunistic human pathogen
      - Saksenaeaceae
        
        Saksenaea
        
        Saksenaea oblongispora
        
        Apophysomyces - generic, Apophysomyces elegans+trapeziformis
      - Syncephalastraceae
        
        Syncephalastrum - generic, Syncephalastrum monosporum+ racemosum
Animalia
- Arthropoda
  - Arachnida
    - Ixodida
      - Ixodidae
        
        Ixodes
        
        Ixodes scapularis - deer tick
  - Branchiopoda
    - Diplostraca
      - Daphniidae
        
        Daphnia
        
        Daphnia pulex - water flea
  - Chilopoda
    - Geophilomorpha
      - Linotaeniidae
        
        Strigamia
        
        Strigamia maritima - centipede
  - Insecta
    - Coleoptera
      - Passallidae
        
        Paxillus - generic, Paxillus_involutus+rubicundulus
      - Tenebrionidae
        
        Tribolium
        
        Tribolium castaneum - red flour beetle
    - Diptera
      - Culicidae
        
        Aedes
        
        Aedes aegypti - yellow fever mosquito
        
        Anopheles
        
        Anopheles gambiae - malaria mosquito
        
        Culex - generic, culex
      - Drosophilidae
        
        Drosophila
        
        Drosophila melanogaster - generic, fruit fly
      - Tephritidae
        
        Bactrocera
        
        Bactrocera cucurbitae - melon fly
        Bactrocera dorsalis - oriental fruit fly
    - Hemiptera
      - Aphididae
        
        Acyrthosiphon
        
        Acyrthosiphon pisum - pea aphid
        
        Cerataphis
        
        Cerataphis brasiliensis - Palm Aphid
      - Delphacidae
        
        Nilaparvata
        
        Nilaparvata lugens - brown planthopper
    - Hymenoptera
      - Apidae
        
        Bombus
        
        Bombus impatiens - common eastern bumble bee
        Bombus terrestris - buff-tailed bumble bee
        
        Apis
        
        Apis dorsata - giant honey bee
        Apis florea - red dwarf honey bee
        Apis - generic, apis
      - Formicidae
        
        Acromyrmex
        
        Acromyrmex echinatior - Panamanian leaf-cutter ant
        
        Atta
        
        Atta cephalotes - leaf cutting ant
      - Pteromalidae
        
        Nasonia
        
        Nasonia vitripennis - parasitoid wasp
      - Tenthredinidae
        
        Athalia
        
        Athalia rosae - turnip sawfly
    - Lepidoptera
      - Bombycidae
        
        Bombyx
        
        Bombyx mori - silkworm
      - Nymphalidae
        
        Danaus
        
        Danaus plexippus - butterfly
        
        Heliconius
        
        Heliconius melpomene - postman butterfly
    - Psocodea
      - Pediculidae
        
        Pediculus
        
        Pediculus humanus - human louse
- Chordata
  - Actinopterygii
    - Acanthuriformes
      - Sciaenidae
        
        Larimichthys
        
        Larimichthys crocea - large yellow croaker
    - Anguilliformes
      - Anguillidae
        
        Anguilla
        
        Anguilla anguilla - European eel, 109 genes
    - Beloniformes
      - Adrianichthyidae
        
        Oryzias
        
        Oryzias sinensis - Japanese rice fish
    - Characiformes
      - Characidae
        
        Astyanax
        
        Astyanax mexicanus - Mexican tetra or blind cave fish
    - Cichliformes
      - Cichlidae
        
        Amphilophus
        
        Amphilophus citrinellus - Midas cichlid, red devil cichlid
        
        Astatotilapia
        
        Astatotilapia burtoni - Burton's mouthbrooder
        
        Neolamprologus
        
        Neolamprologus brichardi - Lyretail cichlid, Princess of Burundi
        
        Oreochromis
        
        Oreochromis niloticus - African cichlid
    - Clupeiformes
      - Clupeidae
        
        Clupea
        
        Clupea harengus - Atlantic herring
    - Cypriniformes
      - Cyprinidae
        
        Ctenopharyngodon
        
        Ctenopharyngodon idella - grass carp
        
        Cyprinus
        
        Cyprinus carpio - mirror carp, common carp
        
        Danio
        
        Danio rerio - Zebrafish, additional variant
        Danio rerio - Zebrafish, leopard danio
    - Cyprinodontiformes
      - Cyprinodontidae
        
        Cyprinodon - Cyprinodon_nevadensis+variega
      - Fundulidae
        
        Fundulus
        
        Fundulus heteroclitus - Mummichog , killifish
      - Rivulidae
        
        Austrofundulus
        
        Austrofundulus limnaeus - bony fishes
    - Esociformes
      - Esocidae
        
        Esox
        
        Esox lucius - northern pike
    - Gasterosteiformes
      - Gasterosteidae
        
        Gasterosteus
        
        Gasterosteus aculeatus - Three-spined stickleback
    - Gobiiformes
      - Gobiidae
        
        Boleophthalmus
        
        Boleophthalmus pectinirostris - great blue-spotted mudskipper, 122 genes
    - Lepisosteiformes
      - Lepisosteidae
        
        Lepisosteus
        
        Lepisosteus oculatus - spotted gar
    - Perciformes
      - Moronidae
        
        Dicentrarchus
        
        Dicentrarchus labrax - European seabass
      - Nototheniidae
        
        Notothenia
        
        Notothenia coriiceps - yellowbelly rockcod, black rockcod
    - Petromyzontiformes
      - Petromyzontidae
        
        Petromyzon
        
        Petromyzon marinus - Sea lamprey
    - Pleuronectiformes
      - Cynoglossidae
        
        Cynoglossus
        
        Cynoglossus semilaevis - Tonguefish
    - Salmoniformes
      - Salmonidae
        
        Oncorhynchus
        
        Oncorhynchus mykiss - rainbow trout
    - Scorpaeniformes
      - Anoplopomatidae
        
        Anoplopoma
        
        Anoplopoma fimbria - sablefish
      - Cottidae
        
        Cottus
        
        Cottus rhenanus - small benthic Rhine sculpin
    - Tetraodontiformes
      - Tetraodontidae
        
        Dichotomyctere
        
        Dichotomyctere nigroviridis - Spotted green pufferfish
        
        Takifugu
        
        Takifugu rubripes - Torafugu
  - Amphibia
    - Anura
      - Pipidae
        
        Xenopus - generic, frog
  - Aves
    - Accipitriformes
      - Accipitridae
        
        Aquila
        
        Aquila chrysaetos - Golden eagle
        
        Haliaeetus
        
        Haliaeetus leucocephalus - bald eagle
    - Anseriformes
      - Anatidae
        
        Anas
        
        Anas platyrhynchos - Mallard
        
        Anser
        
        Anser cygnoides - Swan goose, Chinese goose
    - Apodiformes
      - Apodidae
        
        Chaetura
        
        Chaetura pelagica - Chimney swift
      - Trochilidae
        
        Calypte
        
        Calypte anna - Anna's hummingbird
    - Apterygiformes
      - Apterygidae
        
        Apteryx
        
        Apteryx australis - Brown kiwi
    - Bucerotiformes
      - Bucerotidae
        
        Buceros
        
        Buceros rhinoceros - Rhinoceros hornbill
    - Caprimulgiformes
      - Caprimulgidae
        
        Antrostomus
        
        Antrostomus carolinensis - Chuck-will's-widow
    - Cariamiformes
      - Cariamidae
        
        Cariama
        
        Cariama cristata - Red-legged seriema
    - Charadriiformes
      - Charadriidae
        
        Charadrius
        
        Charadrius vociferus - Killdeer
      - Scolopacidae
        
        Philomachus
        
        Philomachus pugnax - Ruff, Philomachus pugnax
    - Coliiformes
      - Coliidae
        
        Colius
        
        Colius striatus - Speckled mousebird
    - Columbiformes
      - Columbidae
        
        Columba
        
        Columba livia - Rock pigeon
    - Cuculiformes
      - Cuculidae
        
        Cuculus
        
        Cuculus canorus - Common cuckoo
    - Falconiformes
      - Falconidae
        
        Falco
        
        Falco cherrug - Saker falcon
    - Galliformes
      - Phasianidae
        
        Gallus
        
        Gallus gallus - Aves generic
        
        Meleagris
        
        Meleagris gallopavo - Wild Turkey
    - Otidiformes
      - Otididae
        
        Chlamydotis
        
        Chlamydotis macqueenii - MacQueen's bustard
    - Passeriformes
      - Acanthisittidae
        
        Acanthisitta
        
        Acanthisitta chloris - Rifleman
      - Corvidae
        
        Corvus
        
        Corvus brachyrhynchos - American crow
      - Muscicapidae
        
        Ficedula
        
        Ficedula albicollis - collared flycatcher
      - Pipridae
        
        Manacus
        
        Manacus vitellinus - golden-collared manakin
      - Thraupidae
        
        Geospiza
        
        Geospiza fortis - medium ground finch
    - Pelecaniformes
      - Ardeidae
        
        Egretta
        
        Egretta garzetta - Little egret
    - Sphenisciformes
      - Spheniscidae
        
        Aptenodytes
        
        Aptenodytes forsteri - Emperor penguin
  - Chondrichthyes
    - Chimaeriformes
      - Callorhinchidae
        
        Callorhinchus
        
        Callorhinchus milii - Elephant shark
  - Mammalia
    - Afrosoricida
      - Chrysochloridae
        
        Chrysochloris
        
        Chrysochloris asiatica - Cape golden mole
    - Artiodactyla
      - Bovidae
        
        Bison
        
        Bison bison - American bison
        
        Bos
        
        Bos grunniens - wild yak
        Bos taurus - cattle
        
        Bubalus
        
        Bubalus bubalis - Water buffalo
        
        Capra
        
        Capra hircus - Goat
      - Camelidae
        
        Camelus
        
        Camelus dromedarius - Bactrian camel
        
        Vicugna
        
        Vicugna pacos - alpaca
    - Carnivora
      - Canidae
        
        Canis
        
        Canis lupus - gray wolf
        
        Vulpes
        
        Vulpes vulpes - Fox generic
      - Felidae
        
        Acinonyx
        
        Acinonyx jubatus - Cheetah
        
        Felis
        
        Felis catus - domestic cat
        
        Lynx
        
        Lynx pardinus - Iberian lynx
      - Mustelidae
        
        Mustela
        
        Mustela putorius - European Polecat
      - Phocidae
        
        Leptonychotes
        
        Leptonychotes weddellii - Weddell seal
      - Ursidae
        
        Ailuropoda
        
        Ailuropoda melanoleuca - Giant panda
    - Cetacea
      - Balaenidae
        
        Balaena
        
        Balaena mysticetus - bowhead whale
      - Balaenopteridae
        
        Balaenoptera
        
        Balaenoptera acutorostrata - common minke whale or northern minke whale
      - Lipotidae
        
        Lipotes
        
        Lipotes vexillifer - baiji, Chinese river dolphin
    - Chiroptera
      - Pteropodidae
        
        Pteropus
        
        Pteropus vampyrus - Large flying fox
      - Vespertilionidae
        
        Eptesicus
        
        Eptesicus fuscus - Big brown bat
        
        Myotis
        
        Myotis lucifugus - Little brown bat
    - Cingulata
      - Dasypodidae
        
        Dasypus
        
        Dasypus novemcinctus - Nine-banded armadillo
    - Dasyuromorphia
      - Dasyuridae
        
        Sarcophilus
        
        Sarcophilus harrisii - Tasmanian devil
    - Dermoptera
      - Cynocephalidae
        
        Galeopterus
        
        Galeopterus variegatus - Sunda flying lemur, Malayan flying lemur, Sunda Colugo or Malayan colugo
    - Didelphimorphia
      - Didelphidae
        
        Monodelphis
        
        Monodelphis domestica - gray short-tailed opossum
    - Erinaceomorpha
      - Erinaceidae
        
        Erinaceus
        
        Erinaceus europaeus - hedgehog
    - Hyracoidea
      - Procaviidae
        
        Procavia
        
        Procavia capensis - Rock hyrax
    - Lagomorpha
      - Leporidae
        
        Oryctolagus
        
        Oryctolagus cuniculus - European rabbit
      - Ochotonidae
        
        Ochotona
        
        Ochotona princeps - American pika
    - Macroscelidea
      - Macroscelididae
        
        Elephantulus
        
        Elephantulus edwardii - Cape long-eared elephant shrew
    - Monotremata
      - Ornithorhynchidae
        
        Ornithorhynchus
        
        Ornithorhynchus anatinus - Platypus
    - Perissodactyla
      - Rhinocerotidae
        
        Ceratotherium
        
        Ceratotherium simum - White rhinoceros
    - Pholidota
      - Manidae
        
        Manis
        
        Manis pentadactyla - Chinese pangolin
    - Pilosa
      - Megalonychidae
        
        Choloepus
        
        Choloepus hoffmanni - Hoffmann's two-fingered sloth
    - Primates
      - Aotidae
        
        Aotus
        
        Aotus nancymai - Ma's night monkey, Aotus nancymai
      - Callitrichidae
        
        Callithrix
        
        Callithrix jacchus - White-tufted-ear marmoset
      - Cercopithecidae
        
        Cercocebus
        
        Cercocebus atys - Sooty mangabey
        
        Chlorocebus
        
        Chlorocebus sabaeus - Green monkey
        
        Colobus
        
        Colobus angolensis - Angolan colobus
        
        Macaca
        
        Macaca mulatta - Rhesus monkey
        
        Mandrillus
        
        Mandrillus leucophaeus - drill
      - Galagidae
        
        Otolemur
        
        Otolemur garnettii - Northern greater galago, small-eared galago
      - Hominidae
        
        Gorilla
        
        Gorilla gorilla - Western gorilla
        
        Homo
        
        Homo sapiens - Human
        
        Pan
        
        Pan troglodytes - Common chimpanzee
      - Hylobatidae
        
        Nomascus
        
        Nomascus leucogenys - gibbon
    - Rodentia
      - Bathyergidae
        
        Fukomys
        
        Fukomys damarensis - Damaraland mole-rat, Damara mole rat, Damaraland blesmol
        
        Heterocephalus
        
        Heterocephalus glaber - naked mole-rat, sand puppy, desert mole rat
      - Chinchillidae
        
        Chinchilla
        
        Chinchilla lanigera - Long-tailed chinchilla
      - Cricetidae
        
        Cricetulus
        
        Cricetulus barabensis - Chinese hamster
      - Dipodidae
        
        Jaculus
        
        Jaculus jaculus - lesser Egyptian jerboa
      - Heteromyidae
        
        Dipodomys
        
        Dipodomys ordii - Kangaroo rat
      - Muridae
        
        Apodemus
        
        Apodemus sylvaticus - wood mouse
        
        Mus
        
        Mus musculus - generic, mouse
      - Sciuridae
        
        Ictidomys
        
        Ictidomys tridecemlineatus - thirteen-lined ground squirrel,striped gopher
        
        Marmota
        
        Marmota marmota - alpine marmot
    - Soricomorpha
      - Soricidae
        
        Sorex
        
        Sorex araneus - Common shrew
      - Talpidae
        
        Condylura
        
        Condylura cristata - Star-nosed mole
  - Reptilia
    - Crocodylia
      - Alligatoridae
        
        Alligator
        
        Alligator mississippiensis - American alligator
        Alligator sinensis - Chinese alligator
    - Squamata
      - Dactyloidae
        
        Anolis
        
        Anolis carolinensis - Green anole, Carolina anole
    - Testudines
      - Cheloniidae
        
        Chelonia
        
        Chelonia mydas - Green sea turtle
      - Emydidae
        
        Chrysemys
        
        Chrysemys picta - Painted turtle
  - Leptocardii - lancelet
- Cnidaria
  - Anthozoa
    - Actiniaria
      - Edwardsiidae
        
        Nematostella
        
        Nematostella vectensis - sea anemone
- Ctenophora
  - Tentaculata
    - Lobata
      - Bolinopsidae
        
        Mnemiopsis
        
        Mnemiopsis leidyi - warty comb jelly
- Echinodermata
  - Echinoidea
    - Camarodonta
      - Strongylocentrotidae
        
        Strongylocentrotus
        
        Strongylocentrotus purpuratus - sea urchin
        Strongylocentrotus purpuratus - additional variant; sea urchin
- Mollusca
  - Gastropoda
    - Aplysiida
      - Aplysiidae
        
        Aplysia
        
        Aplysia californica - california sea hare
- Nematoda
  - Chromadorea
    - Rhabditida
      - Diplogastridae
        
        Pristionchus
        
        Pristionchus pacificus - nematode
      - Onchocercidae
        
        Brugia
        
        Brugia malayi - parasitic nematode
      - Rhabditidae
        
        Caenorhabditis
        
        Caenorhabditis brenneri
        Caenorhabditis elegans - C.elegans
  - Enoplea
    - Trichinellida
      - Trichinellidae
        
        Trichinella
        
        Trichinella spiralis - parasitic nematode
- Platyhelminthes
  - Trematoda
    - Diplostomida
      - Schistosomatidae
        
        Schistosoma
        
        Schistosoma mansoni - parasitic trematode
- Porifera
  - Demospongiae
    - Haplosclerida
      - Niphatidae
        
        Amphimedon
        
        Amphimedon queenslandica - sponge
- Placozoa - placozoans
Plantae
- Bryophyta
  - Bryopsida
    - Funariales
      - Funariaceae
        
        Physcomitrella
        
        Physcomitrella patens - Bryophyte, mosses
- Charophyta
  - Klebsormidiophyceae
    - Klebsormidiales
      - Klebsormidiaceae
        
        Klebsormidium
        
        Klebsormidium flaccidum - filamentous terrestrial alga
- Chlorophyta
  - Chlorophyceae
    - Sphaeropleales
      - Selenastraceae
        
        Monoraphidium
    - Volvocales
      - Chlamydomonadaceae
        
        Chlamydomonas - Chlamydomonas generic
  - Mamiellophyceae
    - Mamiellales
      - Bathycoccaceae
        
        Ostreococcus
        
        Ostreococcus lucimarinus - green algae
  - Trebouxiophyceae
    - Chlorellales
      - Chlorellaceae
        
        Parachlorella
        
        Parachlorella kessleri - Chlorella kessleri, unicellular green alga
        
        Chlorella - green algae, generic, Chlorella variabilis+pyrenoidosa+vulgaris
    - incertae sedis
      - Coccomyxaceae
        
        Coccomyxa - green algae
- Tracheophyta
  - Liliopsida
    - Arecales
      - Arecaceae
        
        Phoenix
        
        Phoenix dactylifera - date palm
    - Dioscoreales
      - Dioscoreaceae
        
        Dioscorea
        
        Dioscorea alata - yam
    - Poales
      - Poaceae
        
        Aegilops
        
        Aegilops tauschii - Tausch's goatgrass
        
        Brachypodium
        
        Brachypodium distachyon - purple false brome
        
        Eragrostis
        
        Eragrostis tef - tef
        
        Hordeum
        
        Hordeum vulgare - barley
        
        Leersia
        
        Leersia perrieri - cutgrasses
        
        Oropetium
        
        Oropetium thomaeum - desiccation-tolerant grass
        
        Oryza
        
        Oryza sativa - long-grained rice
        
        Setaria
        
        Setaria italica
        
        Sorghum
        
        Sorghum bicolor - Sorghum
        
        Triticum
        
        Triticum aestivum - wheat
        
        Zea
        
        Zea mays - sweetcorn
    - Zingiberales
      - Musaceae
        
        Ensete
        
        Ensete ventricosum - Ethiopian banana, Abyssinian banana, false banana, or ensete
        
        Musa
        
        Musa acuminata - dwarf banana
  - Lycopodiopsida
    - Selaginellales
      - Selaginellaceae
        
        Selaginella
        
        Selaginella moellendorffii - Lycophyte, Club-mosses
  - Magnoliopsida
    - Amborellales
      - Amborellaceae
        
        Amborella
        
        Amborella trichopoda - rare understory shrub
    - Apiales
      - Apiaceae
        
        Daucus
        
        Daucus carota - carrot
    - Asterales
      - Asteraceae
        
        Cynara
        
        Cynara cardunculus - cardoon
        
        Erigeron
        
        Erigeron canadensis - horseweed
        
        Lactuca
        
        Lactuca sativa - 147 genes, cultivated lettuce, garden lettuce
        
        Silybum
        
        Silybum marianum - milk thistle, lady's thistle, holy thistle, variegated thistle, Scotch thistle
        
        Helianthus
        
        Helianthus annuus - Sunflower, generic
        Helianthus - Sonflower, generic
    - Brassicales
      - Brassicaceae
        
        Aethionema
        
        Aethionema arabicum
        
        Brassica
        
        Brassica rapa - turnip, field mustard
        
        Camelina
        
        Camelina sativa - false flax, gold-of-pleasure
        
        Capsella
        
        Capsella rubella - pink shepherd's-purse
        
        Leavenworthia
        
        Leavenworthia alabamica - gladecresses
        
        Raphanus
        
        Raphanus sativus - radish
        
        Sisymbrium
        
        Sisymbrium irio - London rocket
        
        Arabidopsis
        
        Arabidopsis thaliana - rockcress, thale cress
        Arabidopsis - generic
        
        Arabis - generic, Arabis alpina+montbretiana+nordmanniana
        Eutrema - generic, Eutrema halophilum+parvulum+salsugineum
    - Caryophyllales
      - Amaranthaceae
        
        Beta
        
        Beta vulgaris - beet
        
        Spinacia
        
        Spinacia oleracea - spinach
      - Caryophyllaceae
        
        Dianthus
        
        Dianthus caryophyllus - clove pink, carnation
        
        Silene
        
        Silene latifolia - white campion
    - Cucurbitales
      - Cucurbitaceae
        
        Citrullus
        
        Citrullus lanatus - wild melon
        
        Cucumis
        
        Cucumis melo - muskmelon
    - Ericales
      - Actinidiaceae
        
        Actinidia
        
        Actinidia chinensis - fruit tree and medicinal plant
      - Primulaceae
        
        Primula - generic, Primula veris + vulgaris
    - Fabales
      - Fabaceae
        
        Arachis
        
        Arachis duranensis - Arachis spegazzinii
        
        Cicer
        
        Cicer arietinum - chickpea
        
        Glycine
        
        Glycine max - soybean
        
        Lotus
        
        Lotus japonicus - wild legume
        
        Lupinus
        
        Lupinus angustifolius - narrow-leaved blue lupine
        
        Phaseolus
        
        Phaseolus vulgaris - common bean, French bean , string bean, kidney bean
        
        Medicago
        
        Medicago truncatula - barrel medic, leguminous
        Medicago - generic
    - Fagales
      - Betulaceae
        
        Betula
        
        Betula nana - alpine birch
      - Fagaceae
        
        Castanea
        
        Castanea mollissima - Chinese chestnut
      - Juglandaceae
        
        Juglans
        
        Juglans regia - common walnut, English walnut, Persian walnut
    - Gentianales
      - Apocynaceae
        
        Catharanthus
        
        Catharanthus roseus - Madagascar periwinkle , old-maid, chula, chatas
      - Rubiaceae
        
        Coffea
        
        Coffea canephora - robusta coffee
    - Lamiales
      - Lamiaceae
        
        Ocimum
        
        Ocimum tenuiflorum - Ocimum tenuiflorum
      - Lentibulariaceae
        
        Genlisea
        
        Genlisea aurea - Genlisea minor, Genlisea ornata
      - Oleaceae
        
        Fraxinus
        
        Fraxinus excelsior - European ash
      - Pedaliaceae
        
        Sesamum
        
        Sesamum indicum - sesame, benne
      - Phrymaceae
        
        Erythranthe
        
        Erythranthe guttata - spotted monkey flower
        Erythranthe - spotted monkey flower
    - Malpighiales
      - Euphorbiaceae
        
        Jatropha
        
        Jatropha curcas - Barbados nut, purging nut, physic nut, JCL
        
        Manihot
        
        Manihot esculenta - cassava, tapioca, yuca, manioc
        
        Ricinus
        
        Ricinus communis - castor bean
        
        Hevea - generic
      - Linaceae
        
        Linum
        
        Linum usitatissimum - common flax, linseed
      - Salicaceae
        
        Populus
        
        Populus trichocarpa - poplar, black cottonwood
    - Malvales
      - Malvaceae
        
        Gossypium
        
        Gossypium raimondii - diploid cotton
    - Myrtales
      - Lythraceae
        
        Punica
        
        Punica granatum - pomegranate, granado, zakuro, shi liu, grenadier
      - Myrtaceae
        
        Eucalyptus
        
        Eucalyptus grandis - rose gum
    - Proteales
      - Nelumbonaceae
        
        Nelumbo
        
        Nelumbo nucifera - sacred lotus, padma, Indian lotus
    - Rosales
      - Cannabaceae
        
        Humulus
        
        Humulus lupulus - european hop, common hop
        
        Cannabis
      - Moraceae
        
        Morus
        
        Morus notabilis - mulberries
      - Rosaceae
        
        Fragaria
        
        Fragaria vesca - wild strawberry
        
        Malus
        
        Malus domestica - apple
        
        Prunus
        
        Prunus persica - peach
        
        Pyrus
        
        Pyrus bretschneideri - Chinese white pear, bai li
    - Sapindales
      - Rutaceae
        
        Citrus
        
        Citrus aurantium - sweet orange
    - Solanales
      - Convolvulaceae
        
        Ipomoea
        
        Ipomoea batatas - sweet potato
        Ipomoea trifida - wild sweet potato
      - Solanaceae
        
        Capsicum
        
        Capsicum annuum - chilli pepper, bell pepper, paprika, cayenne, halapenos
        
        Solanum
        
        Solanum lycopersicum - tomato, Solanum lycopersicum
        Solanum lycopersicum - generic, tomato
        
        Nicotiana - generic
    - Vitales
      - Vitaceae
        
        Vitis
        
        Vitis vinifera - wine grape
  - Monocot plants - generic, Corn, Rice, Wheat, Barley
Chromista
- Apicomplexa
  - Aconoidasida
    - Piroplasmorida
      - Babesiidae
        
        Babesia - generic, piroplasms
- Cryptophyta
  - Cryptophyceae
    - Pyrenomonadales
      - Geminigeraceae
        
        Guillardia
        
        Guillardia theta - cryptomonads
- Myzozoa
  - Aconoidasida
    - Haemospororida
      - Plasmodiidae
        
        Plasmodium
        
        Plasmodium falciparum - malaria parasite
  - Conoidasida
    - Eucoccidiorida
      - Sarcocystidae
        
        Toxoplasma
        
        Toxoplasma gondii - apicomplexans
- Ochrophyta
  - Bacillariophyceae
    - Naviculales
      - Phaeodactylaceae
        
        Phaeodactylum
        
        Phaeodactylum tricornutum - Diatoms
  - Dictyochophyceae
    - Pelagomonadales
      - Pelagomonadaceae
        
        Aureococcus
        
        Aureococcus anophagefferens - heterokont alga
- Oomycota
  - Peronosporea
    - Albuginales
      - Albuginaceae
        
        Albugo
        
        Albugo laibachii - plant pathogen
    - Peronosporales
      - Peronosporaceae
        
        Hyaloperonospora
        
        Hyaloperonospora arabidopsidis - plant pathogen
        
        Phytophthora - plant pathogen
      - Pythiaceae
        
        Globisporangium
        
        Globisporangium ultimum - plant pathogen
    - Saprolegniales
      - Leptolegniaceae
        
        Aphanomyces - water moulds
- Cercozoa - cercozoans, freshwater amoeboids
Protozoa
- Amoebozoa
  - Lobosa
    - Amoebida
      - Acanthamoebidae
        
        Acanthamoeba
        
        Acanthamoeba castellanii - amoebae
      - Entamoebidae
        
        Entamoeba
        
        Entamoeba histolytica - anaerobic parasitic protozoan
- Euglenozoa
  - Kinetoplastea
    - Trypanosomatida
      - Trypanosomatidae
        
        Trypanosoma
        
        Trypanosoma brucei - kinetoplastids
        
        Leishmania - kinetoplastids
- Metamonada
  - Trepomonadea
    - Distomatida
      - Hexamitidae
        
        Giardia
        
        Giardia duodenalis - diplomonads, Giardia lamblia
- Microsporidia
  - Microsporea
    - Dissociodihaplophasida
      - Nosematidae
        
        Nosema - generic, Nosema_apis+bombycis+ceranae, microsporidians
  - incertae sedis
    - Nematocida
      - Nematocida parisii - microsporidians, generic, Nematocida_parisii+sp_1
- Mycetozoa
  - Dictyosteliomycetes
    - Dictyosteliales
      - Dictyosteliaceae
        
        Dictyostelium
        
        Dictyostelium discoideum - cellular slime molds

The FGENESH++ Terms of Use and Acknowledgement Statement are required to be acknowledged prior to access.

I, the Principal Investigator or End User have read and acknowledged the FGENESH++ Service Terms of Use and Policies.

The Australian FGENESH++ Service is provided by the Australian Biocommons in collaboration with and underpinned by resources provided by Pawsey Supercomputing Centre and Bioplatforms Australia. When papers acknowledge the Australian FGENESH++ Service, they support continued research infrastructure investments by institutions and governments. Please acknowledge the Australian FGENESH++ Service with the following statement:

This work was supported by the Australian FGENESH++ Service (https://biocommons.org.au/fgenesh-plus-plus) provided by the Australian BioCommons and Galaxy Australia.

I, the Principal Investigator or End User will cite the use of the FGENESH++ Service using the above acknowledgement statement and web address.

Privacy Collection Notice: By completing this form you agree that your responses will be provided to the Australian BioCommons and Galaxy Australia and will be used solely for the purposes of determining suitability for access to the Australian FGENESH++ Service. Your responses will be protected against unauthorised access and use; providing your name is required to enable any follow ups. For more information, please see the BioCommons Privacy Statement.